HsaEX6012726 @ hg19
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30975919-30981003:-
Coord C1 exon
chr2:30980912-30981003
Coord A exon
chr2:30977156-30977230
Coord C2 exon
chr2:30975919-30976064
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTCCATGCTCAGGTC
3' ss Score
7.96
5' ss Seq
TTGGTATTT
5' ss Score
2.39
Exon sequences
Seq C1 exon
ATTCAATACCGAAGGGGCTGGGAAGAAATTATCTCCCTGTGGAACCCCTGGGGCTGGGGCGAGGCCGAATGGAGAGGGCGCTGGAGTGATGG
Seq A exon
GTCTCAGGAGTGGGAGGAAACCTGTGATCCGCGGAAAAGCCAGCTACATAAGAAACGGGAAGATGGCGAGTTTTG
Seq C2 exon
GATGTCGTGTCAAGATTTCCAACAGAAATTCATCGCCATGTTTATATGTAGCGAAATTCCAATTACCCTGGACCATGGAAACACACTCCACGAAGGATGGTCCCAAATAATGTTTAGGAAGCAAGTGATTCTAGGAAACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.615 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.0=100)
A:
PF0064816=Peptidase_C2=FE(8.4=100)
C2:
PF0064816=Peptidase_C2=PD(6.0=36.0),PF0106717=Calpain_III=PU(12.4=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGGGCTGGGAAGAAATT
R:
GTGTGTTTCCATGGTCCAGGG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)