RnoEX6027760 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24609964-24615498:-
Coord C1 exon
chr6:24615413-24615498
Coord A exon
chr6:24611477-24611551
Coord C2 exon
chr6:24609964-24610109
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTATCCATACCCAGGTC
3' ss Score
9.16
5' ss Seq
TTGGTATTT
5' ss Score
2.39
Exon sequences
Seq C1 exon
ATTCAGTACCGGAGGGGCTGGGAAGAAATCATCCGCCTTTGGAACCCCTGGGGCAACACAGAATGGAGAGGCCGCTGGGGAGATGG
Seq A exon
GTCCCAGGAGTGGTGGGAAACCCATGGCTCACGGAAAAGCCAGCTGTACGAGAATAAGGATGACGGCGAGTTTTG
Seq C2 exon
GATGTCCTGTCGAGATTTCCATGAGAACTTCTCGTGCCTGTACATATGTAGCCAGTTCCCGATCACTATGGATCCTGGAGTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTAAGAACCAAGTGATCTCAGGAAACACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.020
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
PF0064816=Peptidase_C2=FE(8.4=100)
C2:
PF0064816=Peptidase_C2=PD(6.1=36.0),PF0106717=Calpain_III=PU(12.4=34.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGGAAGAAATCATCCG
R:
CCAGCTCTCATTGGGTGTGAC
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]