MmuEX6079236 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73339342-73345224:-
Coord C1 exon
chr17:73345139-73345224
Coord A exon
chr17:73341075-73341149
Coord C2 exon
chr17:73339342-73339487
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGTTCTCTATCCATACCTAGGTC
3' ss Score
7.39
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATTCAGTACCAGGGGCGTTGGGAAGACATCATCCGCCTTTGGAACCCCTGGGGCAAGACAGAATGGAAAGGACGCTGGAAAGATGG
Seq A exon
GTCCAAGGAGTGGAGAGAAACCCATGACCCACGGAAAAGCCAGCTGTATGAGAACAAGGAAGATGGCGAGTTTTG
Seq C2 exon
GATGTCCTGTCAAGATTTCCAGGAGAACTTCTCCTGCCTGTTCATATGTAACCAGATCCCGATCACCATGGATCATGGAGTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTACAAACCAAGTGATCTCAAGAAACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.551 C2=0.040
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=38.0),PF0106717=Calpain_III=PU(13.1=36.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCATCCGCCTTTGGAACC
R:
AAACCTCATTTGTCGCCAGCT
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types