BtaEX0006984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69102147-69108746:+
Coord C1 exon
chr11:69102147-69102232
Coord A exon
chr11:69106522-69106596
Coord C2 exon
chr11:69108602-69108746
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTCTCCACGCCCAGGTC
3' ss Score
8.02
5' ss Seq
TTGGTACTT
5' ss Score
3.19
Exon sequences
Seq C1 exon
ATTGAGTACAGGAGGAGCTGGGAGTATCTTATCCGCCTGTGGAACCCCTGGGGCAAGATCGAATGGAGAGGGCGCTGGAGCGACTG
Seq A exon
GTCTCCAGAGTGGCAGGAAACCCACGACCAACGGAAAAGCCAGCTGTATGAGGATAAGGACAATGGCGAGTTTTG
Seq C2 exon
GATGTCATGTCAAGATTTCCGAGATAACTTCTTCGGCCTGTTTATATGTAACCAAGTTCCAATCAGCCTGGACCATGGAAGCACGCCCCATGAAAGATGGTCCCAAATGATGTTTAAGGACCACTTAATTCCAGGAAACACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
PF0064816=Peptidase_C2=FE(8.4=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=38.0),PF0106717=Calpain_III=PU(12.5=34.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTACAGGAGGAGCTGGGAG
R:
ATCTTTCATGGGGCGTGCTTC
Band lengths:
181-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development