MmuEX6056578 @ mm10
Exon Skipping
Gene
ENSMUSG00000023033 | Scn8a
Description
sodium channel, voltage-gated, type VIII, alpha [Source:MGI Symbol;Acc:MGI:103169]
Coordinates
chr15:101024261-101031763:+
Coord C1 exon
chr15:101024261-101024383
Coord A exon
chr15:101029578-101029862
Coord C2 exon
chr15:101031710-101031763
Length
285 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCCCTTCCAATGCAGGTG
3' ss Score
10.98
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCTCTTTAGTCAGCCTTATAGCTAATGCCCTGGGCTACTCGGAACTAGGTGCCATAAAGTCCCTTAGGACCCTAAGAGCTTTGAGACCCTTAAGAGCCTTATCACGATTTGAAGGGATGAGG
Seq A exon
GTGGTGGTGAACGCCTTGGTGGGCGCCATCCCCTCCATCATGAACGTGCTGCTGGTGTGTCTCATCTTCTGGCTGATTTTCAGCATCATGGGCGTTAACCTGTTTGCTGGGAAATACCACTACTGCTTCAACGAGACTTCAGAAATCCGGTTCGAAATCGACGAGGTGAACAATAAAACCGACTGTGAGAAGCTCATGGAGGGCAACAACACAGAGATCCGATGGAAGAACGTCAAGATCAACTTCGACAACGTCGGGGCAGGCTACCTGGCCCTTCTTCAAGTG
Seq C2 exon
GCAACCTTCAAAGGCTGGATGGACATCATGTATGCAGCTGTAGATTCCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023033-'52-58,'52-54,56-58=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.4=100)
A:
PF0052026=Ion_trans=FE(40.9=100)
C2:
PF0052026=Ion_trans=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGTCAGCCTTATAGCTAATGCCC
R:
CTTTCGGGAATCTACAGCTGCA
Band lengths:
172-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types