RnoEX6034129 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142667180-142674790:+
Coord C1 exon
chr7:142667180-142667302
Coord A exon
chr7:142672430-142672714
Coord C2 exon
chr7:142674737-142674790
Length
285 bp
Sequences
Splice sites
3' ss Seq
CCGCCTCCCTTCCAACGCAGGTG
3' ss Score
9.83
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCTCTTTAGTCAGCCTTATAGCTAATGCCCTGGGCTACTCGGAACTAGGTGCCATAAAGTCCCTTAGGACCCTAAGAGCTTTGAGACCCTTAAGAGCCTTATCACGATTTGAAGGGATGAGG
Seq A exon
GTGGTGGTGAATGCCTTGGTGGGCGCCATCCCCTCCATCATGAATGTGCTGCTGGTGTGTCTCATCTTCTGGCTGATTTTCAGCATCATGGGAGTTAACCTGTTTGCGGGGAAATACCACTACTGCTTTAACGAGACTTCTGAAATCCGGTTCGAAATCGATATTGTCAACAATAAAACGGACTGTGAGAAGCTCATGGAGGGCAACAGCACGGAGATCCGATGGAAGAATGTCAAGATCAACTTTGACAATGTCGGAGCAGGGTACCTGGCCCTTCTTCAAGTG
Seq C2 exon
GCAACCTTCAAAGGCTGGATGGACATCATGTATGCGGCTGTAGATTCCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'50-45,'50-44,51-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.4=100)
A:
PF0052026=Ion_trans=FE(40.9=100)
C2:
PF0052026=Ion_trans=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGTCAGCCTTATAGCTAATGCCC
R:
CTTTCGGGAATCTACAGCCGC
Band lengths:
172-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]