MmuEX6096385 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130077220-130079533:+
Coord C1 exon
chr4:130077220-130077252
Coord A exon
chr4:130079164-130079280
Coord C2 exon
chr4:130079492-130079533
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTCCGTTTTCCCCATCAGAGC
3' ss Score
10.24
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
GGATCCTTACCCATCGAGAAACACCTCCTCAAG
Seq A exon
AGCATCTGTGGTGACTGTGCCCAGGGCCAGACGGCTCATCCAGCCTTCCTTCTGGAGAAAGGAGAAAAGGGGGACCAGGGCATCCCTGGCGTGCCAGGTTTTGACAACTGTGCCAGG
Seq C2 exon
TGCTTCATAGAGAGGGAACGCCCAAGAGCTGAGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'63-75,'63-74,67-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.786 C2=0.952
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.6=18.2)
A:
NO
C2:
PF0139113=Collagen=PU(2.1=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types