BtaEX6012353 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122588312-122590757:+
Coord C1 exon
chr2:122588312-122588344
Coord A exon
chr2:122590492-122590608
Coord C2 exon
chr2:122590716-122590757
Length
117 bp
Sequences
Splice sites
3' ss Seq
CACCCTCCCCTTCTCATCAGAGC
3' ss Score
9.14
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGATCCTTGCCCATTGAACAGCACCTCCTGAAG
Seq A exon
AGCATCTGCGGGGACTGTATCCAGGGCAAGATGGCTCACGAGGTGGCCCTCATGGAAAGCGGAGAGAAGGGAGACCAGGGCATCCCCGGCGTGCCAGGCCTCGACAGTTGCACCCAG
Seq C2 exon
TGCTTCATGGAGCGGGAGCGCCCGAGAGCCGAGGAGGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'56-60,'56-58,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.692 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.7=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]