HsaEX6029705 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32138197-32140640:-
Coord C1 exon
chr1:32140608-32140640
Coord A exon
chr1:32138325-32138441
Coord C2 exon
chr1:32138197-32138238
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCACTCCCTGATCAGAGT
3' ss Score
8.29
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGATCCTTACCAATTGAACAGCACCTCCTTAAG
Seq A exon
AGTATCTGCGGGGACTGTGTCCAGGGGCAGAGGGCCCACCCAGGGTACCTCGTGGAGAAGGGAGAGAAGGGAGACCAGGGCATCCCTGGTGTGCCAGGCCTCGACAACTGCGCCCAG
Seq C2 exon
TGCTTTTTGTCACTGGAGCGCCCAAGAGCCGAGGAGGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'56-59,'56-58,60-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.628 C2=0.875
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.0=18.2)
A:
PF0139113=Collagen=WD(100=84.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)