MmuEX6096385 @ mm9
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:129754464-129756777:+
Coord C1 exon
chr4:129754464-129754496
Coord A exon
chr4:129756408-129756524
Coord C2 exon
chr4:129756736-129756777
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTCCGTTTTCCCCATCAGAGC
3' ss Score
10.24
5' ss Seq
AGGGTAGGA
5' ss Score
6.45
Exon sequences
Seq C1 exon
GGATCCTTACCCATCGAGAAACACCTCCTCAAG
Seq A exon
AGCATCTGTGGTGACTGTGCCCAGGGCCAGACGGCTCATCCAGCCTTCCTTCTGGAGAAAGGAGAAAAGGGGGACCAGGGCATCCCTGGCGTGCCAGGTTTTGACAACTGTGCCAGG
Seq C2 exon
TGCTTCATAGAGAGGGAACGCCCAAGAGCTGAGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'50-56,'50-55,51-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.730 C2=0.899
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.6=18.2)
A:
NO
C2:
PF0139113=Collagen=PU(5.4=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: