GgaEX7010590 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4927357-4927932:-
Coord C1 exon
chr23:4927888-4927932
Coord A exon
chr23:4927690-4927806
Coord C2 exon
chr23:4927357-4927392
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCCCCCCACCTTCTCCCAGAAC
3' ss Score
8.76
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GGACCATTGGCTGTCATGGCTGAGAGGAACATCGAGGTGCTGAAG
Seq A exon
AACATCTGCGGGGACTGCGCCCACCTGCAGGCGGCCTTTGAAGCACCCAGAAGCTTCAAGGGGGAAAAGGGAGACCAAGGCATGCCAGGAGCCCCCGGCAACGAGGGTTGTGCACGT
Seq C2 exon
TGCTTTGCCCAGTTCCCAAGAGCTGAGGAGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836-'54-58,'54-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.692 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.0=20.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]