MmuEX6096411 @ mm9
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:129731390-129732434:+
Coord C1 exon
chr4:129731390-129731470
Coord A exon
chr4:129731593-129731718
Coord C2 exon
chr4:129732381-129732434
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTCCCACATTGCAGTGT
3' ss Score
8.59
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTGACCTTCAGCAGGCGCACATCTACTGCGACCCGGAGCTGGTGCTGGAGGAAGGCTGCTGTGAGATCTTACCGGGAGGG
Seq A exon
TGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAGCAATGAGCTCATTGAGATCAATCCTCAGACAGAGGGCAAGGTCTACACCCGGTGCTTCTGCTTGGAGGAACCTCAGAACAGCAAG
Seq C2 exon
GTGGACGCGCAGCTCATGGGAAGAAACATCCAGAAAGCAGAAAGGGGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'9-11,'9-8,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.950
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(2.7=11.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCAGGCGCACATCTA
R:
CTTTGTCCCCCTTTCTGCTTTCT
Band lengths:
130-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: