BtaEX6012385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122562230-122563456:+
Coord C1 exon
chr2:122562230-122562310
Coord A exon
chr2:122562483-122562608
Coord C2 exon
chr2:122563403-122563456
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCCAACACTGGACAGTGT
3' ss Score
3.2
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTGACCTTCAGCAGGCACACATCTACTGTGACCCAGAGTTCGTGCTGGAGGAGGGCTGCTGTGAGATATTACCAGGAGGG
Seq A exon
TGTCCCCCAGAGACCTCCAAGGCCCGCCGGGACACCCAGAACAATGAGCTCATCGAGATCAATCCACAGACTGAGGGCAAGGTCTACACCCGCTGCTTCTGCCTGGAGGAGCCCCAGAACAGCAAG
Seq C2 exon
GTGGATGCCCAGCTGTCGGGAAGAATCAGCCAGAAGCCAGAAAGAGGAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'8-11,'8-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.933
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCAGGCACACATCTA
R:
CTTTGCTCCTCTTTCTGGCTTCT
Band lengths:
130-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]