GgaEX1016396 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4934547-4935342:-
Coord C1 exon
chr23:4935262-4935342
Coord A exon
chr23:4934956-4935087
Coord C2 exon
chr23:4934547-4934594
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTTCTCTCCCATCAGTGC
3' ss Score
9.81
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
TTCGACCTGCAGCAGGCGCACATCTACTGCGACGCAGAGCTGGCCCGGCACGAGGGATGCTGTGAGATCTCAGCCAGCGGG
Seq A exon
TGCCAACCTGAAGCGCCCAAAACGCGGCGTCAGGCAGAGCTGATGCAGAGCAGCAACCTCATCGAGATCTCACCGCAGCCGCAGGGCCGGGTGTACACGCGCTGCTTCTGCCTGGAGGAGCCGCTGGGCCCG
Seq C2 exon
GAGCCAGCAAGAGAGAAGAGCAGCCTGAAGGCACATCGTGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.455 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(10.8=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGCGCACATCTACTG
R:
TTCTCCCCACGATGTGCCTTC
Band lengths:
119-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]