RnoEX6023545 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148264183-148265247:+
Coord C1 exon
chr5:148264183-148264263
Coord A exon
chr5:148264388-148264513
Coord C2 exon
chr5:148265194-148265247
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCATATTGAGCAGTGT
3' ss Score
4.8
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTGACCTTCAGCAGGCGCACATCTACTGTGACCCGGAGCTGGTGCTGGAGGAAGGCTGCTGTGAGATCTTACCGGGAGGG
Seq A exon
TGTCCCCCAGAGACCTCCAAGTCACGCCGGGACACCCAGAGTAATGAGCTCATTGAGATCAATCCTCAGACCGAGGGCAAGGTCTACACCCGCTGCTTCTGCTTGGAAGAACCTCATAACAGCAAG
Seq C2 exon
GTGGACGCACAGCTGATGGGAAGAAGCAGCCAGAAGGCAGAAAGGGGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.984
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(3.5=14.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCAGGCGCACATCTA
R:
CTTTGTCCCCCTTTCTGCCTT
Band lengths:
130-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]