DreEX6073892 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:38980788-39004180:-
Coord C1 exon
chr19:39004100-39004180
Coord A exon
chr19:38997291-38997365
Coord C2 exon
chr19:38980788-38980820
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGACTCTTGTTTTTCCGTAGTGC
3' ss Score
7.52
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATTGACATCCAGCAAGTGATGGTGTATTGTGACCCCTCTCTGGCAATCCAGGAAGCCTGCTGTGAGATTCCTGGAGCTCGG
Seq A exon
TGCCCGCCTGATGCTCCAAAGAGTCGCCGAGCTGCAGAGAACCAGGTGGAGTTTGTGCCCAACCCCTTCAGTCAG
Seq C2 exon
GCAATCCTCGGATCCAAAGAACTGGCGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.505 C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(0.9=3.7)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGATGGTGTATTGTGACC
R:
TTTTTCCGCCAGTTCTTTGGA
Band lengths:
103-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]