MmuEX6104182 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120327839-120328329:+
Coord C1 exon
chr2:120327839-120327916
Coord A exon
chr2:120328123-120328180
Coord C2 exon
chr2:120328265-120328329
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTCTCTCCCTCAGGAC
3' ss Score
10.85
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCAAGGCCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGAC
Seq A exon
GACATGGAGATCTGTGCAGATGAACTCAAGAATGTCCTCAACACAGTGGTGAACAAAC
Seq C2 exon
ACAAGGACCTGAAGACACAAGGGTTCACGCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.166 C2=0.154
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=PU(30.5=94.7),PF0175117=Toprim=PU(14.0=73.7)
C2:
PF138331=EF-hand_8=FE(35.6=100),PF0175117=Toprim=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACACAGACCAGGAAA
R:
ATGAGAGCTATCATGCTTCTGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: