MmuEX6104182 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120502103-120502593:+
Coord C1 exon
chr2:120502103-120502180
Coord A exon
chr2:120502387-120502444
Coord C2 exon
chr2:120502529-120502593
Length
58 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTTCTCTCCCTCAGGAC
3' ss Score
10.85
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCAAGGCCTGGCCACACAGACCAGGAAAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATCGCAGGCGAC
Seq A exon
GACATGGAGATCTGTGCAGATGAACTCAAGAATGTCCTCAACACAGTGGTGAACAAAC
Seq C2 exon
ACAAGGACCTGAAGACACAAGGGTTCACGCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'42-43,'42-35,53-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.190 C2=0.179
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACACAGACCAGGAAA
R:
ATGAGAGCTATCATGCTTCTGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types