RnoEX6018556 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112275070-112275683:+
Coord C1 exon
chr3:112275070-112275147
Coord A exon
chr3:112275477-112275534
Coord C2 exon
chr3:112275619-112275683
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATAATTCTTTTCTCCCTCAGGAC
3' ss Score
10.3
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
Seq A exon
GACATGGAGATCTGTGCGGATGAACTCAAGAATGTCCTTAATACGGTGGTGAACAAAC
Seq C2 exon
ACAAGGACCTGAAGACACAAGGGTTCACTCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.120 C2=0.112
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACACAGACCAGGAG
R:
ATGAGAGCTATCATGCTTCTGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]