BtaEX6052761 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37882782-37883448:+
Coord C1 exon
chr10:37882782-37882859
Coord A exon
chr10:37883231-37883288
Coord C2 exon
chr10:37883384-37883448
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCCTTTCCTCCTCAGGAC
3' ss Score
12.11
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
CTAGAGCCTGGCAACACCGACCAGGAAAGTGAGGAACAGCGGCAATTCCGGAATATTTTCAGGCAGATAGCAGGCGAT
Seq A exon
GACATGGAGATCTGCGCAGATGAGCTCAAGAACGTCCTTAACAGAGTTGTGAACAAAC
Seq C2 exon
ATAAGGACCTGAAGACACAAGGCTTCACGCTGGAGTCCTGCCGTAGCATGATTGCTCTCATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'30-26,'30-25,31-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCCTGGCAACACCGA
R:
TGCTACGGCAGGACTCCAG
Band lengths:
126-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]