GgaEX6038019 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24956607-24957871:+
Coord C1 exon
chr5:24956607-24956684
Coord A exon
chr5:24957187-24957244
Coord C2 exon
chr5:24957807-24957871
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTCCCCTTGTTTCCCACCAGGAC
3' ss Score
11.37
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CGTTCTTCAGCAAAAGCTCGTGAGAAGAGTGAAGAGGAAACTCAGTTCAGGAATATTTTCCGACAGATTGCAGGGGAT
Seq A exon
GACATGGAGATCAATGCCGAAGAACTCAGGAATGTTCTCAACAACGTTGTTAAAAAAC
Seq C2 exon
ATAAGGACCTAAAGACAGAAGGATTTGAACTAGAATCCTGCCGCAGCATGATCGCTTTGATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTTCAGCAAAAGCTCGTG
R:
CATCAAAGCGATCATGCTGCG
Band lengths:
140-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]