HsaEX6074173 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42701501-42702193:+
Coord C1 exon
chr15:42701501-42701578
Coord A exon
chr15:42701985-42702042
Coord C2 exon
chr15:42702129-42702193
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCTTCCTCCTCAGGAC
3' ss Score
12.28
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CCACAGCCTGGCAGCTCTGATCAGGAAAGTGAGGAACAGCAACAATTCCGGAACATTTTCAAGCAGATAGCAGGAGAT
Seq A exon
GACATGGAGATCTGTGCAGATGAGCTCAAGAAGGTCCTTAACACAGTCGTGAACAAAC
Seq C2 exon
ACAAGGACCTGAAGACACACGGGTTCACACTGGAGTCCTGCCGTAGCATGATTGCGCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF038858=DUF327=FE(30.9=100),PF134051=EF-hand_6=PU(28.2=42.3)
A:
PF138331=EF-hand_8=PU(30.5=94.7),PF0175117=Toprim=PU(14.9=78.9)
C2:
PF038858=DUF327=PD(17.3=63.6),PF134051=EF-hand_6=PD(17.9=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTGGCAGCTCTGATC
R:
TGCTACGGCAGGACTCCAG
Band lengths:
124-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)