DreEX6056039 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45352657-45353104:+
Coord C1 exon
chr17:45352657-45352770
Coord A exon
chr17:45352906-45352963
Coord C2 exon
chr17:45353040-45353104
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTGTATTTTGCAGAAC
3' ss Score
11.72
5' ss Seq
AACGTATGT
5' ss Score
7.69
Exon sequences
Seq C1 exon
CCTTCTCCGGCTTCAACTGGGGAGGAGAGCGAAGAGGACCAACAGTTCCTGTCCATTTTCCAGCACATCGCGGGGGACGTGAGTACTGGGGAGGCAGTGAGCGCTTGGGGGAGT
Seq A exon
AACATGGAGGTCTCTGCCAACGAGCTTAAAGATGTCTTGAACAAGGTGGTGTCTAAAC
Seq C2 exon
ACAAGGACATTCACACCGAGAGCTTCAGTCGAGAGTGCTGTAGAAGCATGATTGCCCTCATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'20-18,'20-17,21-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(31.1=100)
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGCGAAGAGGACCAA
R:
AGCACTCTCGACTGAAGCTCT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]