RnoEX6011359 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225740619-225742219:+
Coord C1 exon
chr2:225740619-225740743
Coord A exon
chr2:225741231-225741329
Coord C2 exon
chr2:225742033-225742219
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTCTAGCAT
3' ss Score
12.79
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ATTGTTCTCCCTGCCACTTTTGTGTTCTTGGCTCTGATGCTTTCCATCATCGTGCCTCCGTTTGGTGAATTCCCAGCTTTGACCCTTCACCCCTGGATGTATGGGCATCAATTTACCTTCTTCAG
Seq A exon
CATGGATGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTTTGAACAGGCCAGGTTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
Seq C2 exon
GGAGTACCCCTGCGGCAACGCAACCTCCTGGAAGACGCCTTCCGTGTCCCCAAACATCACCCACCTGTTCCAGAAGCAGAAATGGACAGCAGCCCACCCTTCGCCCGCCTGCAAGTGCAGCACCAGAGAGAAGCTCATCATGCTCCCCGAATGCCCCGAGGGTGCTGGGGGGCTCCCACCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'39-43,'39-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCCATCATCGTGCCTC
R:
GGCTGCTGTCCATTTCTGCTT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]