BtaEX6093095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4667485-4695113:+
Coord C1 exon
chr22:4667485-4667565
Coord A exon
chr22:4670336-4670463
Coord C2 exon
chr22:4694950-4695113
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTGTTGTCTCCACAGGGT
3' ss Score
12.4
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TACATGACTGCCGCGGCTCCTATGCAAGGGACCTACATCCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCCATTGAA
Seq A exon
GGTGTTGTGGCTGATACCTCTCCCCAGACAGTGGCACCTTCGTCCCAGGACACGAGTGGTCAGCAGCAGCAGATAGCAGTGGACACAGCCAGCGAGCATGCATCTGCGTATTCCTACCAACAGTCCAA
Seq C2 exon
ACCATAAACAAGACTGAAGAATGTCCGTCTGAAACTCTGCCTTGAATGAAGAAACTTCATTAAACAAGAAGTTGGCTTCCAGTTTTGCACAGGCGTCGATGGAATGCTGTTTTGTTTGTTTTTTTAATTTTCTACTTTACCCAATGAAAACAACATGTTTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGACTGCCGCGGCTC
R:
ACATGTTGTTTTCATTGGGTAAAGT
Band lengths:
239-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]