HsaEX0052788 @ hg19
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:13427]
Coordinates
chr3:30029634-30046620:+
Coord C1 exon
chr3:30029634-30029714
Coord A exon
chr3:30032573-30032700
Coord C2 exon
chr3:30045347-30046620
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGCCTCCTTAGGGT
3' ss Score
9.89
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TATATGACTGCTGCTGCTCCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAGACAGTGGCACCTTCATCCCAGGACACCAGTGGTCAGCAGCAACAGATAGCAGTGGACACATCCAACGAACATGCACCTGCATATTCTTACCAACAGTCTAA
Seq C2 exon
ACCATAAACAGGACTGAAGAATGTCTGTCTGAATCTTTGCCTTGAATGAAGAAACTTCATTGAACAAGAAGTTGGCTTCCAGTTTGCACAGACGTCAATGGAATGCATTTTTTTGTTGTTGTTGTTGTTTTTTTTTTAGTGTTATACCTTACCCAATGAAAGCAAAGTTTTTATGTGCTGTGCAAATGGTCTTCATGTGGTCTGACAATTTATTTTTGCCATCATTTTTTTAATTAAAGAAAAAATTTCCAGAAGAGGAAAAAAAAACTACAAAAAACAAAACATTGAAGGTTGATATTTTATGTGGAAGAACATTTGAATTGAATTCAGAATTTTTCTGAAGGTGTAGATACTTTTTTTTTTTTTTTAACAGAAAACCTGATGTCAAGAGGTGGGCAATAGAAATGGAAACAAATTGTCTTCCTCAATAATTAAGCTACTTTCTCTTTTTCCCTTCTTGTTTTAATCTAGTGGGTTTTTTATTTTATTTTTTCTTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-'34-41,'34-40,36-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTCAGTACACGCCTG
R:
TGAAGACCATTTGCACAGCACA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)