DreEX6042222 @ danRer10
Exon Skipping
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39693236-39696947:-
Coord C1 exon
chr16:39696864-39696947
Coord A exon
chr16:39696293-39696420
Coord C2 exon
chr16:39693236-39693542
Length
128 bp
Sequences
Splice sites
3' ss Seq
CAGACATCATGTTGTTGCAGGGA
3' ss Score
5.11
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TACATGACTGCGGCTGCTGCTCCTATGCAGGGGACCTATATTCCCCAGTACACTGCGGTGCCTGCCTCTGCTGTCTCAGTGGAG
Seq A exon
GGAGTGGTGACGGATGCTTCTCCACAGAGCGTTCCAGCCTCGTCACAGGACGCCAGCGGGCAGCAACAGGCTCTGGGTGTGGAAAACACCAGCGATCACGCGCCCACCTACTCTTTTCAGCCCGCCAA
Seq C2 exon
ATAACCAGAGGAGGAGCGGGGTGCTGAGGTGACTGCGTTGCCTTGAGACTGGGGGACTGCAACGAGGGAACATTGAAGACAGAGCGCAAGAGATAGGAAAACACGTTTGTGTCTACTTTTGCACAAGCATCTAAAAAACAACAACAAACAAACAATTTATTTAACACCTGGCCCACAGCGGAGGACCTTTGGAGAAACTCACAACCAGATGGGAAACCAGATGAGAAATGCAGTCTGGGCTACCCTGATGAAAAAAAAACTTTACCTTCATGAAGTGAACGAATTCAAACAAGTACAAGTTTTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.977 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCCAGTACACTGCGGT
R:
GTTTCTCCAAAGGTCCTCCGC
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]