Special

MmuEX0039213 @ mm9

Exon Skipping

Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116481870-116495213:-
Coord C1 exon
chr9:116495136-116495213
Coord A exon
chr9:116491856-116491983
Coord C2 exon
chr9:116481870-116487820
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTACCGATTTGCCTCTTTAGGGT
3' ss Score
9.16
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
Seq C2 exon
ACCATAGACAGAAGTGAGGATGTCTGCCTGAACCTTTACCTTCAATGAAGAAACGTCACTGAGCAAGAAGTTAGTTGGCCTCCGGTTTGCACAGGCGCCAAGGGAAAGCTTTCTTCTTCTTTTATTTTTATTATTTTTTTTATTATTTTATATTTTACTCAAAGAAAACAAAATTTTTATGTGCTGTGCGAATGGTTCCTCCGTGTGGTCTAACACTTATTTTTGTCTTTTTTTTTTAATTAACGGGAAAAAACAAATCCCAGAAAGGGGTGGGGGATGGCAAACATCACAAGTTGATGCTGTCTTTGGAAAAACAGAATTTGCCTGAAGGTATAAGTAGATTTGTTTTTTAAAAAGTAGAAACACCAATGTCAAGAGTTGGGCAACCAGATGTTTAAGAAAATTATTTTCCTCAGTAATTAAGCTATTTTTTTCCTCTTCTTTTCTTTTCTTGTTTGAACCTCCTGGGTTTTTTATATATATATAAATATTTTATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-7/7=6-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.154 A=0.998 C2=0.286
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000131371f3995A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000133621





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000066735, ENSMUSP00000107402, ENSMUSP00000107403, ENSMUSP00000131371, ENSMUSP00000134172
          









    
Other Skipping Isoforms:
ENSMUSP00000039706
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr3:29991082-29991209 
HIGH PSI
HsaEX0052788
(RBMS3)
Human
(hg19)
chr3:30032573-30032700 
HIGH PSI
HsaEX0052788
(RBMS3)
Rat
(rn6)
chr8:124840161-124840261 
HIGH PSI
RnoEX0074771
(Rbms3)
Cow
(bosTau6)
chr22:4670336-4670463 
HIGH PSI
BtaEX6093095
(RBMS3)
Chicken
(galGal4)
chr2:40179343-40179470 
HIGH PSI
GgaEX6019433
([1])
Chicken
(galGal3)
chr2:39600247-39600374 
HIGH PSI
GgaEX6019433
(RBMS3)
Zebrafish
(danRer10)
chr16:39696293-39696420 
HIGH PSI
DreEX6042222
(rbms3)
Fruitfly
(dm6)
chr3L:5162456-5162610 
HIGH PSI
DmeEX0009456
(shep)




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TACATTCCCCAGTACACGCCT

				
R: 
GACCACACGGAGGAACCATTC

				
Band lengths: 
258-386

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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