DmeEX0009456 @ dm6

Exon Skipping

Gene

Description

The gene alan shepard is referred to in FlyBase by the symbol Dmelshep (CG32423, FBgn0052423). It is a protein_coding_gene from Dmel. It has 9 annotated transcripts and 9 polypeptides (6 unique). Gene sequence location is 3L:5155821..5277944. Its molecular function is described by: RNA binding; mRNA binding. It is involved in the biological process described with 7 unique terms, many of which group under: response to gravity; response to abiotic stimulus; response to stimulus; anatomical structure development; behavior. 65 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; appendage; adult segment; adult tagma; nervous system. The phenotypic classes of alleles include: increased mortality during development; increased mortality; phenotype; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages.

Coordinates

chr3L:5160686-5163149:-

Coord C1 exon

chr3L:5162967-5163149

Coord A exon

chr3L:5162456-5162610

Coord C2 exon

chr3L:5160686-5161601

Length

155 bp

Sequences

Splice sites

3' ss Seq

ACTTTTCTCCATCGTTACAGTAT

3' ss Score

7.7

5' ss Seq

GAGGTGAGT

5' ss Score

10.03

Exon sequences

Seq C1 exon

ACTTCGTATTCTCCACAGTACATGCAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGCGGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCGGTGATACGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTGCAGATTGGCAACTCT

Seq A exon

TATATTAGTCCAACTTATCCATATTATGCACCACCACCAACTATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCACAGCTGCATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCTCCCAAATAGGTCTTCGCGAG

Seq C2 exon

CTATAATATATTAGTACCCCATTTGAGTACTATATAAATTGGACGAGAGTGAGAGCAAGCCGGAGGCGGAGAAGCGGAAAAGCCAAGGAGGGAGGAGAATCAACATCAAAAGCAGAGGATCGGATAAAGGAGTCTACAACAACCACCACATGAACAACAACTAGAAGAGGGAACTGCTGAAGCAACAACATCGGCAGAAGAAACAAAAACCCAGCATCCAGAATCTAGAGAAAAGCCATCCCGTAATGCCGGGAAAATCCCAGAGAGCGGAGGCAGAAAAATAATGTATAAATAAGGCGGTTGGATGTGAGGATGAAGTTTAGGGGGTACATGAATGCGAAAAGAAAAGCCGGTCTCCGAAGAGACGAGCGCATAGGACGCGAGAAAAAAAGTGAAGAAAAGCAAAGACTTAACTTAAATAATAGAGAATAGTTATACACTAAATAAACAACCAGAGATGCAAAAGCAGCGCGGCAACCATTGCCAAAAGAAACAGCGGC

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0052423_MULTIEX1-1/2=C1-C2

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. Stop)

No structure available

Features