MmuEX0039213 @ mm10
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116572746-116586095:-
Coord C1 exon
chr9:116586018-116586095
Coord A exon
chr9:116582738-116582865
Coord C2 exon
chr9:116572746-116578702
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTACCGATTTGCCTCTTTAGGGT
3' ss Score
9.16
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
Seq C2 exon
ACCATAGACAGAAGTGAGGATGTCTGCCTGAACCTTTACCTTCAATGAAGAAACGTCACTGAGCAAGAAGTTAGTTGGCCTCCGGTTTGCACAGGCGCCAAGGGAAAGCTTTCTTCTTCTTTTATTTTTATTATTTTTTTTATTATTTTATATTTTACTCAAAGAAAACAAAATTTTTATGTGCTGTGCGAATGGTTCCTCCGTGTGGTCTAACACTTATTTTTGTCTTTTTTTTTTAATTAACGGGAAAAAACAAATCCCAGAAAGGGGTGGGGGATGGCAAACATCACAAGTTGATGCTGTCTTTGGAAAAACAGAATTTGCCTGAAGGTATAAGTAGATTTGTTTTTTAAAAAGTAGAAACACCAATGTCAAGAGTTGGGCAACCAGATGTTTAAGAAAATTATTTTCCTCAGTAATTAAGCTATTTTTTTCCTCTTCTTTTCTTTTCTTGTTTGAACCTCCTGGGTTTTTTATATATATATAAATATTTTATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.998 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCCCCAGTACACGCCT
R:
GACCACACGGAGGAACCATTC
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types