RnoEX0074771 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124836657-124844312:-
Coord C1 exon
chr8:124844235-124844312
Coord A exon
chr8:124840161-124840261
Coord C2 exon
chr8:124836657-124836757
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTGCTGATACCTCTCCCCAGACG
3' ss Score
7.65
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TATATGACCGCTGCTCCCATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
ACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCGCCGGCATATTCATTCCAACAGTCCAA
Seq C2 exon
ACCATAGGCAGAAGCGAGGACACTCGTCTGAACCCCTACCTTCAATGAAGAAACGTCACTGAACAAGAAGTTAGTTGGCCTCCGGTTTGCACAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'41-37,'41-36,42-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATATGACCGCTGCTCCCATG
R:
CTGGGGCCTGTGCAAACC
Band lengths:
179-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]