HsaEX0052788 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29988143-30004076:+
Coord C1 exon
chr3:29988143-29988223
Coord A exon
chr3:29991082-29991209
Coord C2 exon
chr3:30003856-30004076
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGCCTCCTTAGGGT
3' ss Score
9.89
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TATATGACTGCTGCTGCTCCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACCTCTCCCCAGACAGTGGCACCTTCATCCCAGGACACCAGTGGTCAGCAGCAACAGATAGCAGTGGACACATCCAACGAACATGCACCTGCATATTCTTACCAACAGTCTAA
Seq C2 exon
ACCATAAACAGGACTGAAGAATGTCTGTCTGAATCTTTGCCTTGAATGAAGAAACTTCATTGAACAAGAAGTTGGCTTCCAGTTTGCACAGACGTCAATGGAATGCATTTTTTTGTTGTTGTTGTTGTTTTTTTTTTAGTGTTATACCTTACCCAATGAAAGCAAAGTTTTTATGTGCTGTGCAAATGGTCTTCATGTGGTCTGACAATTTATTTTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX5-8/8=7-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTCAGTACACGCCTG
R:
TGAAGACCATTTGCACAGCACA
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development