GgaEX6019433 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:40176792-40183497:+
Coord C1 exon
chr2:40176792-40176872
Coord A exon
chr2:40179343-40179470
Coord C2 exon
chr2:40183323-40183497
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGACTCCTTAGGGT
3' ss Score
8.44
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TACATGACTGCTGCTGCACCTATGCAAGGGACCTACATTCCCCAGTACACTCCTGTGCCTCCAACAGCTGTCCCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACTTCTCCACAGACAGTAGCATCTTCATCACAGGAAGCCAGTGGTCAACAGCAACAGATGACAGTGGAAACATCCAGTGAACATGCACCTGCATATTCTTACCAACAATCTAA
Seq C2 exon
ACAATAAACAGGACTGAAGAATGTCGGTCTGAAATCATTGCCTTGAATGGAGAAACTTCACTGAACAAGAAGTTGGCTTCCAGTTTGCACAGGCGTCAAATGAATGCTTTCTTTTTTTTTTCTACCTTTCCCAACGAAAACAAAACAGTGTTTTTATGTGCTGTGCAAATGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'22-28,'22-26,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000037692fB4116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGCTGCTGCACCTATG
R:
TGCACAGCACATAAAAACACTGT
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]