GgaEX6019433 @ galGal3
Exon Skipping
Gene
ENSGALG00000011439 | RBMS3
Description
NA
Coordinates
chr2:39597696-39604919:+
Coord C1 exon
chr2:39597696-39597776
Coord A exon
chr2:39600247-39600374
Coord C2 exon
chr2:39604751-39604919
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGACTCCTTAGGGT
3' ss Score
8.44
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TACATGACTGCTGCTGCACCTATGCAAGGGACCTACATTCCCCAGTACACTCCTGTGCCTCCAACAGCTGTCCCTATTGAA
Seq A exon
GGTGTTGTTGCTGATACTTCTCCACAGACAGTAGCATCTTCATCACAGGAAGCCAGTGGTCAACAGCAACAGATGACAGTGGAAACATCCAGTGAACATGCACCTGCATATTCTTACCAACAATCTAA
Seq C2 exon
ACAATAAACAGGACTGAAGAATGTCGGTCTGAAATCATTGCCTTGAATGGAGAAACTTCACTGAACAAGAAGTTGGCTTCCAGTTTGCACAGGCGTCAAATGAATGCTTTCTTTTTTTTTTCTACCTTTCCCAACGAAAACAAAACAGTGTTTTTATGTGCTGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.991 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTGCTGCTGCACCTATG
R:
TGCACAGCACATAAAAACACTGT
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]