BtaEX6093426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12073469-12075542:-
Coord C1 exon
chr22:12075401-12075542
Coord A exon
chr22:12074713-12074910
Coord C2 exon
chr22:12073469-12073648
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCCTTGCTCCTCCAGACC
3' ss Score
11.14
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACATGTCCTGAGGGCTACAGGTGCCTGAAGGCAGGTGAGAACCCTGACCATGGCTACACCAGCTTCGACTCCTTCGCCTGGGCCTTCCTCGCACTCTTCCGACTGATGACGCAGGACTGCTGGGAGCGCCTCTACCAGCAG
Seq A exon
ACCCTGAGGTCTGCAGGGAAGATCTACATGATCTTCTTCATGCTGGTCATCTTCCTGGGCTCCTTCTACTTGGTGAACTTGATCCTGGCTGTGGTCGCCATGGCCTACGAGGAGCAAAACCAAGCCACCATCGCAGAGACAGAGGAGAAGGAAAAGCGATTCCAGGAAGCCATGGAGTTGCTCAAGAAAGAGCAGGAG
Seq C2 exon
GCCCTCGCCATCAGGGGTGTGGACACCGTGTCCCGCAGCTCCTTGGAGATGTCCCCATTGGCCCCAGTAACCACCCACGAGAGAAGGAGCAAGAGAAGAAAACGAATGTCTTCAGGGATGGAAGAGTGTGGGGACGACAAGTTCCCCAAGTCCGACTCAGAGGATGGTCCCCGAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.717
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.3=100)
A:
PF0052026=Ion_trans=PD(12.1=47.0)
C2:
PF119333=DUF3451=PU(21.6=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCTGACCATGGCTACA
R:
GACTTGGGGAACTTGTCGTCC
Band lengths:
256-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]