RnoEX6038191 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128220408-128221979:-
Coord C1 exon
chr8:128221838-128221979
Coord A exon
chr8:128221202-128221399
Coord C2 exon
chr8:128220408-128220587
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGACCCCTTGCTCCTCCAGACC
3' ss Score
10.53
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACATGCCCTGAGGGCTATCGGTGCCTGAAGGCAGGTGAGAACCCAGACCACGGTTACACCAGCTTCGACTCCTTCGCCTGGGCCTTCCTTGCACTCTTCCGCCTGATGACACAGGACTGCTGGGAACGCCTATACCAGCAG
Seq A exon
ACCCTGAGGTCCGCAGGAAAGATCTACATGATCTTCTTCATGCTTGTCATCTTTCTGGGCTCCTTCTACCTGGTGAACTTGATCCTGGCTGTGGTGGCCATGGCCTACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGGAAGAGAAGGAGAAGCGCTTCCAGGAGGCCATGGAGATGCTCAAGAAGGAACACGAG
Seq C2 exon
GCTCTCACCATCAGGGGTGTGGATACCGTGTCCCATAGCTCTCTGGAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAGAGAAAGAGCAAAAGGAGGAAACGACTATCTTCGGGGACAGAGGATGGTGGGGATGACAGGCTCCCCAAGTCGGACTCAGAAGATGGTCCCAGAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.767
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.5=100)
A:
PF0052026=Ion_trans=PD(12.2=47.0)
C2:
PF119333=DUF3451=PU(21.6=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCAGACCACGGTTACA
R:
CTGTCATCCCCACCATCCTCT
Band lengths:
244-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]