MmuEX6069772 @ mm10
Exon Skipping
Gene
ENSMUSG00000032511 | Scn5a
Description
sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]
Coordinates
chr9:119534555-119536581:-
Coord C1 exon
chr9:119536440-119536581
Coord A exon
chr9:119535813-119536010
Coord C2 exon
chr9:119534555-119534734
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCCTTGCTCCTCCAGACC
3' ss Score
10.29
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACATGTCCTGAAGGCTACCGGTGCCTGAAGGCAGGTGAGAACCCTGACCACGGTTACACCAGCTTCGACTCCTTCGCCTGGGCTTTCCTTGCGCTCTTCCGCCTGATGACACAGGACTGCTGGGAACGTCTATACCAGCAG
Seq A exon
ACCCTGAGGTCCGCAGGAAAGATCTACATGATCTTCTTCATGCTTGTCATATTCCTGGGCTCCTTCTACCTTGTGAACTTGATCCTGGCTGTGGTGGCCATGGCTTACGAGGAGCAAAACCAAGCCACCATCGCCGAGACGGAAGAGAAGGAGAAGCGTTTCCAGGAGGCCATGGAGATGCTCAAGAAGGAACACGAG
Seq C2 exon
GCTCTCACCATCAGGGGCGTGGATACTGTGTCCCGTAGCTCTCTGGAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAGAGAAGGAGCAAGAGGAGGAAACGACTGTCTTCAGGGACAGAGGATGGCGGAGATGACAGGCTCCCCAAGTCGGACTCAGAAGACGGTCCCAGAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032511-'18-12,'18-11,19-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.767
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.5=100)
A:
PF0052026=Ion_trans=PD(12.2=47.0)
C2:
PF119333=DUF3451=PU(21.6=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTACACCAGCTTCGACTC
R:
TTCTGAGTCCGACTTGGGGAG
Band lengths:
253-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types