GgaEX0008657 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5496347-5502473:+
Coord C1 exon
chr2:5496347-5496488
Coord A exon
chr2:5498217-5498414
Coord C2 exon
chr2:5502291-5502473
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTACCTTGGTACTTTTAGACT
3' ss Score
6.45
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CACCTGCCCTGAGGGATACATATGTCTGAAGGCCGGGGAAAATCCTGACCATGGTTACACAAGCTTTGATACTTTTGGCTGGGCCTTTCTCTCTCTGTTCCGTCTTATGACTCAAGACTATTGGGAACGCCTCTACCAACAG
Seq A exon
ACTCTCAGATCTGCTGGGAAGATCTACATGCTCTTTTTTATGCTGGTCATCTTCCTGGGCTCGTTTTATCTGGTCAACCTGATTCTGGCTGTGGTGGCCATGGCATATGAAGAGCAGAACCAAGCCACTATTGCTGAAACAGAAGAAAAGGAAAGAAAGTTTCGGGAAGCCATGGAGATGTTAAAGAAAGAGCAGGAG
Seq C2 exon
GCACTAGCTGCTAAAGGGATTGACTCAATGTCACTTAGCTCCCTGGAAATGTCACCTTTAGCATCCAAGAATGCCAAGGAAAGAAGAAACAGGAGAAAGAAAAAGAAATCTTTGGGAGCAGAAGAATATGGGGAAGACCAGAGGAATTCCAAGTGTGAATATGATGACAGTCAGAGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.144 C2=0.594
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.5=100)
A:
PF0052026=Ion_trans=PD(12.2=47.0)
C2:
PF119333=DUF3451=PU(21.0=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAAAATCCTGACCATGG
R:
TCCCCATATTCTTCTGCTCCCA
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]