DreEX6029418 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52362199-52366150:-
Coord C1 exon
chr2:52366009-52366150
Coord A exon
chr2:52363222-52363419
Coord C2 exon
chr2:52362199-52362375
Length
198 bp
Sequences
Splice sites
3' ss Seq
CATCTTCCTCCCCATGGCAGACT
3' ss Score
8.63
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GAAGTGCCCTGATGGATTTGACTGTTTGAAAACAAGTCGAAACCCAAACTACGGCTACACAAGCTTTGACACCTTTGGCTGGGCTTTTCTGGGTCTGTTCAGACTGATGACACAAGACTACTGGGAAAGCCTTTACCATCAG
Seq A exon
ACTCTGCGGTCGGCGGGGAAGACCTACATGATCTTCTTTGTGTTGGTGATTTTTCTGGGTTCATTTTACCTGGTAAACTTGATCCTGGCTGTGGTGGCTATGGCGTACGAGGAGCAGAACCAGGCCACCATCGCTGAAGCCTGGGCCAAAGAGAGAGAGTTTCAGCTGGCCATGGAGCATCTGCGCAAGGAGCAGAGG
Seq C2 exon
GCTTTAGCAAAACAGCGCAGAAAAGAGGCCGAGATGGCTCTGGCAGCAGATTTTTGTCCATCTCCTTTCTCCCGAAAAGACTCGATAAAATGCAGAACCAGAACGAGATCCCACAGAACGCTCTCAGAGGAGATTGAGGACAGCTTTTTGCCAAAGTTTGAACCGCTTGATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.2=100)
A:
PF0052026=Ion_trans=PD(12.0=47.0),PF119333=DUF3451=PU(12.9=47.0)
C2:
PF119333=DUF3451=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGACACCTTTGGCTGG
R:
CAAGCGGTTCAAACTTTGGCA
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]