DreEX6032010 @ danRer10
Exon Skipping
Gene
ENSDARG00000074575 | si:ch211-269i23.2
Description
si:ch211-269i23.2 [Source:ZFIN;Acc:ZDB-GENE-090312-99]
Coordinates
chr1:30286847-30287435:-
Coord C1 exon
chr1:30287289-30287435
Coord A exon
chr1:30287153-30287206
Coord C2 exon
chr1:30286847-30287076
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATATGAATTCTGTCTTACAGCTG
3' ss Score
9.57
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATAAACAGAAAGAGGCCGAAGAGGAGCAGAGTGCGGAGGATGCATCCAGCGAATTGGCACAGGAAGTGTTTTCACAACTGAAGAGCCAAGGCATTGATCTACCTGAAGATATAGATGCTACTGAACTAGAACACAAATTCAAAGAG
Seq A exon
CTGCAGATAAAACACAGTGTCACAGTCACAGAACTCAGTCAGTTAAGAGAAAAG
Seq C2 exon
TTGGAAGTGAGCGAAGCTGAACGTAAGTCTTGGGAGGCTCGAGGTGCAGCTCTTGAAAGAAGTGTGGAAGAGAGCAAAGAGCGCATTGAAAAGCTGGAAAAATACTGGCTTGATGCTCAGGGGCTCTGCAAAACCATCAATCAGCGTTTAAATGAAGCCCAGAGTCAAAATGACTCCCTTCAGCTGAAATACAATAAGACCATCACGCTTCTACAGGAGCATCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074575-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACTGAAGAGCCAAGGCA
R:
TTTCAAGAGCTGCACCTCGAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]