DreEX6078171 @ danRer10
Exon Skipping
Gene
ENSDARG00000018854 | scaf4b
Description
SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42]
Coordinates
chr15:42344718-42348565:+
Coord C1 exon
chr15:42344718-42344788
Coord A exon
chr15:42346443-42346675
Coord C2 exon
chr15:42348465-42348565
Length
233 bp
Sequences
Splice sites
3' ss Seq
AGTGCTGCATCTCTTTCCAGGTC
3' ss Score
9.79
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GCTGTAGCTGAAACCGAACGCTCAGCCCATGATGGGAGAGAGAAAAGACGCAGCAGACGAACAAGATCAAG
Seq A exon
GTCTCCACATAGACAGTCGTCATCATCATCACGCTCACGAAGATCCCGGTCCGGTTCACGTTCCCGCCGAGAGCGCTCCAGGTATCATCGCACACGCTCTCGATCCAGAGAACGCAGAGGACGCTCTCCACGACCCCGATCTGAGGAGAGGAGAGATCGGGACAAAGAGCGAGAGCGGGAAAAGGAGCGGAGACAAAAAGCAGAGCCGTCTGTCAAAAAGGAAACACTCAGTG
Seq C2 exon
TGTGCACTACTACATTATGGATCGGACAGCTGGACAAAAAGACTCAACGGCAGGACATCACGAGTCTGATGGAGGAGTTTGGACAGATTGAATCCATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018854-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=0.294
Domain overlap (PFAM):
C1:
PF086487=DUF1777=FE(16.0=100)
A:
PF086487=DUF1777=FE(54.2=100)
C2:
PF086487=DUF1777=FE(22.9=100),PF0007617=RRM_1=PU(41.8=82.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAGCTGAAACCGAACGCT
R:
TGGATTCAATCTGTCCAAACTCCT
Band lengths:
166-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]