DreINT0041201 @ danRer10
Intron Retention
Gene
ENSDARG00000043035 | capn3b
Description
calpain 3b [Source:ZFIN;Acc:ZDB-GENE-041001-149]
Coordinates
chr20:26099394-26102198:-
Coord C1 exon
chr20:26101839-26102198
Coord A exon
chr20:26099464-26101838
Coord C2 exon
chr20:26099394-26099463
Length
2375 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTTTTTCTTCTCTGAACAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
CTATAGCGCTGATAAAATTGACCTACTTCGGATACTTTTCATTCATCGCACTTGTGGCATCTGTCATCAAAGAGCAATATGGCAGAAGAACAGAAGTTTTCAGAAACATCTGTCCAACTCACTGAAGCTGCTCCGCAGACAGTGGGCAGTGGTTTTACAGCCCCTGGAAACATTTATTCAGCCATTTTGAGCCGTAATGAGGCTGTTAAAGATGCCAGGAGGCTCAAGGACTTTCAAGAGCTTAGAGATAAATATGTACGCAAGAAAGTGCTGTTTGAAGACCCCCTGTTCCCAGCTCAGGACTCCTCTCTCTTTTACAGTGAAAAGTTCCCCTTAAAGCTTGAATGGAAGCGTCCAATG
Seq A exon
GTGAGTGACCATGCGTGAGGTGGCAGTGTGCATGGGGTCAGTTGCAGTGTATCCTGTTAGGTTCATTCAGTTTGATTGAATGTCTGTAGGTGTCAGAGGAATATTGAAGTTGTATGTTTATAGAGGTAGACTTGAAAATGTAGGTATCAGGTGTAGTCAAAATGTGTCATTTCAGCTGAAAATACCTCACTGATCCTATAATATGAATGCCACTTTCTGGTTAAACGCAAAAATCCCTCTGTTTTCATTTGTGTCTTTTTCAATGCAAATGAGCTGCTCCATTTCAGAAGAGGGATGTGCATCTTCACCACAAGAATGATAAATGAAATTAATATTGGATGCGTCCCATATGACACAATGCACTATGTAATGATACTCAGTTGTTTATTGTGTGAATTTTGATTATCAGTCACCATCAGAGTCTGAAAGCCCTGTAGCCTTAAATATGTAATTACAGCTGTGATAGTTAAGCGCACAAAGTGTCTAATAATCCATACAAACTTTTTTGACTGATTGTCCCATTTGCAGAAATGTCAATAACAACAGAATCACACTTAGAATATTTTATGCTGATGAATTACAATAGCACTGACAGCCAATCAGAATCTGCTTCAATGAGCTCAAGTATTTAAAGTGACAGATGACTGAAATGTACTCTTATAATAACATTAATTCATGGATATTAAAGGTAAAATTATAGTCTTTTTGTAATGATAATGCTAAAAATGCAATTCTAAAAATCATTTTGGGGTGGCACGGTGGCTCAGTGGTTCACCTCACAGCAAGAAGTTTGCTTGTTTGAGTCCCAGCTGGGTCAGTTGGCATTTCTGTGAGGAGTTTGCCAATTCACCCCATGATCATGTGAGTTTCCTCCAGGTGCTCTGGAGCCAAACAGAACAGCCAAACAGAACTTATCATGAACTTGAGAGACAGATGTCAGAACTGAAGCGTCAAATTGGTGTGTGTAAACAGTTCTTGTTTTTAGGCTTAAGTTTATATTGTTTTTAACTGCAATGCTAATAATTAGAATACATTCTAAAAGGGATGGCATGGTGGCTTAGTGGATAGTACTGTTGCCTCACAGCAAGAAGATCGCTTGTTCCGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTTTGCATGTTCTCACGTGGGTTTCCTCCTGGTGCTCAGGTTTCCCCCACATTCCAAAGCTATGCAGTAGGGGAATTTGATCAACTAAATTGGCTGTAGATTGTGAACGGGAGTGTGTGGGGGTGCTTATTTTTTAATTCTAGAAATAATACAGTAATCACAGTTACATCACAATGACACAGAGGAAATATATTGTTAGAATAATGTTTTTTAAAAAATATTTCTCAGTAGAGAAATGCTAAAAACATAGGAATTCACACGGTTTTAAAAGCTTGAGCATTTAAAATAACAATGTGTGATTATAAGGAGTGCATTATTGTGTTTTACTGTGGGTGAAAATATAACAATAGTTATGATTACCTTTATAGGTATTGATAAGTTAAAACTTGCACCTATGACATGAGAATGTGGCTGTGTTCCAGTTTGGGTTCATGGCTGTGGTTTCGCAGCTCTGGACTTTCAGGCAGCTGACTTTCCAAATCCTGCTATGCTGTGTGTCAATGTTTTGTAAAGCAGAGCTCCACCTGATAATAGACTTGTTTGATTATGTTTGATGAGTACTTATATTTTCAAATCATTGTGCTTCATTGTGGAAAAAGGTTACTTATATTAGTGAAATGTTTTTCAAACTAAGAAAATATGGTTATATTTAAAAAAACGATTCATTGAAAGGAACCCAAAATGGTTGCAATGTTGTTGTTGTTTTTTTTTTGGCATCACTGCAAATTTTTTATGTTGTTTTTTTTTTGTCAGTACATCTCGAGTAACTTATAAAAACCTGACCTATCTGTTTTGAATGATGCATAACATACTTTTACAAGCTTCGCTATGATGACTCAGGTTACCGGAAGCTCCAGTAAGTCTTTAGTCAGTAAGGCCCTTGCTAGCTCATTAAAACACATTTTTGGATGGTGCTTCAAAAAGACAATCTTGCAATTTCAGATGTGTTTACGGACACTTCAAAAATAATGAGAGGGATAATGTGTCTCCATGGAATCACATACTGTACATTATCCTGCTTAGACATGCTTCAAGATGCAGCTCATAAAGAAGCATTACTGAAGTTCCGCTCAGCAAACTTAATGACCCAGGACAGCTGCTGGATTTCTGTGGTTGAAGTCTGCACATACTGTCATATTTTGTTTTGTGACTATAGTAAAGGTCTAACAGTAACTGTTCTGTAAAATATCACTATAACATTATTACTGTAACATAATCATATGTGTTTTTCTTCTCTGAACAG
Seq C2 exon
GAAATTTGTAAAAATCCACAGTTCATTCTTGGAGGAGCCAATAGGACTGACATCTGCCAAGGAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043035:ENSDART00000136518:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(9.8=30.9)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]