GgaEX1051188 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:98558-99858:-
Coord C1 exon
chrLGE22C19W28_E50C23:99795-99858
Coord A exon
chrLGE22C19W28_E50C23:99226-99367
Coord C2 exon
chrLGE22C19W28_E50C23:98558-98764
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCTCCTCTCCGCAGTCA
3' ss Score
11.52
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CAAATTTTTACATAATTCCTGGTGCCCCTGATCCTTTGCTCTGTGGTAACAGCTCCGATGCAGG
Seq A exon
TCAATGTCCAGAGGGTTACACATGCATGAAAGCAGGACGGAACCCAAACTACGGTTACACGAGCTTTGACACTTTCAGCTGGGCTTTCCTGGCTCTGTTTCGCCTTATGACTCAGGACTTTTGGGAAAACTTGTATCAATTA
Seq C2 exon
ACCTTACGAGCAGCTGGAAAAACCTACATGATCTTCTTTGTCCTGGTGATCTTCGTGGGCTCGTTCTATCTGGTCAACCTGATTCTGGCTGTGGTGGCCATGGCTTACGAAGAGCAGAACCAGGCTACGTTGGAGGAGGCAGAGCAGAAAGAGGCCGAATTTAAGGCCATGTTAGAACAGTTGAAAAAGCAGCAGGAGGAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'12-11,'12-10,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(8.4=100)
A:
PF0052026=Ion_trans=FE(18.7=100)
C2:
PF0052026=Ion_trans=PD(12.4=44.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGATCCTTTGCTCTGTG
R:
CCTCCTCCTGCTGCTTTTTCA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]