MmuEX6056388 @ mm10
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99307013-99307930:+
Coord C1 exon
chr15:99307013-99307077
Coord A exon
chr15:99307557-99307721
Coord C2 exon
chr15:99307822-99307930
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCTCAACTGTCTACTCCAGTGC
3' ss Score
6.63
5' ss Seq
CCGGTCAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
GCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATGAAGATGGTAGTCACTGACCCCCGCTACAG
Seq A exon
TGCCTTGCCCAAACTAAGTGAGAAGAAGCAGGCGTTTAATGCTTACAAGGCTCAGCGGGAGAAGGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCTCCACCACCCGCTACCG
Seq C2 exon
GCGGGCAGAACAGACTTTTGGGGACCTGGAGGTCTGGGCTGTGGTCCCTGAGAGAGAGAGAAAGGAAGTTTATGATGATGTCCTCTTCTTCCTGGCCAAGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-'19-22,'19-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.875 C2=0.027
Domain overlap (PFAM):
C1:
PF0394210=DTW=FE(18.8=100),PF0184614=FF=FE(42.0=100)
A:
PF0394210=DTW=PD(46.4=92.9),PF0184614=FF=PD(30.0=26.8)
C2:
PF0394210=DTW=PD(4.3=13.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCCTTCCAATGCTTCA
R:
TCTCCTTCTTGGCCAGGAAGA
Band lengths:
172-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types