RnoEX0070119 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140971012-140971929:+
Coord C1 exon
chr7:140971012-140971076
Coord A exon
chr7:140971557-140971721
Coord C2 exon
chr7:140971821-140971929
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCTCAACTGTCCACTCCAGTGC
3' ss Score
5.99
5' ss Seq
CCGGTCAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
GCTGTCCCTTCCAATGCTTCCTGGGAACAGGCCATGAAGATGGTAGTCACTGACCCACGTTACAG
Seq A exon
TGCCTTGCCCAAACTGAGTGAGAAGAAGCAGGCGTTTAATGCTTATAAGGCTCAGCGGGAGAAAGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACTCTGCAGCATTTCCTGGAGCAGCATGAACGCATGACCTCCACCACCCGCTACCG
Seq C2 exon
GCGGGCAGAACAGACTTTTGGGGACCTGGAGGTCTGGGCTGTGGTCCCTGAGAGGGATAGAAAAGAAGTTTATGATGATGTCCTCTTCTTCCTGGCCAAGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.821 C2=0.027
Domain overlap (PFAM):
C1:
PF0394210=DTW=FE(17.6=100),PF0184614=FF=FE(42.0=100)
A:
PF0394210=DTW=FE(46.2=100),PF0184614=FF=PD(30.0=26.8)
C2:
PF0394210=DTW=PD(4.2=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTCCAATGCTTCCTGG
R:
TTCTCCTTCTTGGCCAGGAAGA
Band lengths:
170-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]