MmuEX6056388 @ mm9
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99137444-99138361:+
Coord C1 exon
chr15:99137444-99137508
Coord A exon
chr15:99137988-99138152
Coord C2 exon
chr15:99138253-99138361
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCTCAACTGTCTACTCCAGTGC
3' ss Score
6.63
5' ss Seq
CCGGTCAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
GCTGTCCCTTCCAATGCTTCATGGGAACAGGCCATGAAGATGGTAGTCACTGACCCCCGCTACAG
Seq A exon
TGCCTTGCCCAAACTAAGTGAGAAGAAGCAGGCGTTTAATGCTTACAAGGCTCAGCGGGAGAAGGAGGAGAAAGAGGAGGCCCGGCTGAGAGCCAAGGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAACAGCATGAACGCATGACCTCCACCACCCGCTACCG
Seq C2 exon
GCGGGCAGAACAGACTTTTGGGGACCTGGAGGTCTGGGCTGTGGTCCCTGAGAGAGAGAGAAAGGAAGTTTATGATGATGTCCTCTTCTTCCTGGCCAAGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.875 C2=0.027
Domain overlap (PFAM):
C1:
PF0184614=FF=FE(42.0=100),PF0394210=DTW=FE(18.8=100)
A:
PF0184614=FF=PD(30.0=26.8),PF0394210=DTW=PD(46.4=92.9),PF0184614=FF=PU(44.0=39.3)
C2:
PF0394210=DTW=PD(4.3=13.5),PF0184614=FF=PD(54.0=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCCTTCCAATGCTTCA
R:
TCTCCTTCTTGGCCAGGAAGA
Band lengths:
172-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: