MmuEX6056393 @ mm10
Exon Skipping
Gene
ENSMUSG00000023007 | Prpf40b
Description
pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99305408-99305965:+
Coord C1 exon
chr15:99305408-99305433
Coord A exon
chr15:99305541-99305651
Coord C2 exon
chr15:99305951-99305965
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTCTCCTTCCCCCAGAGG
3' ss Score
11.62
5' ss Seq
GAGGTCCTG
5' ss Score
-2.13
Exon sequences
Seq C1 exon
CTGCTGTGGCTGGAACAGGCCCTCCG
Seq A exon
AGGGCCTTATGGAGTGAGCACGTAGCCCCTGACGGGCGCATCTACTACTACAATGCTGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGTACTCAAGTCTAAGGCAGAG
Seq C2 exon
CTGCTGCTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-'9-16,'9-11,12-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.322 C2=0.626
Domain overlap (PFAM):
C1:
PF0039721=WW=PU(3.2=11.1)
A:
PF0039721=WW=PD(90.3=75.7)
C2:
PF0039721=WW=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types