BtaEX6020834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016589 | PRPF40B
Description
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25031]
Coordinates
chr5:30384066-30384748:-
Coord C1 exon
chr5:30384723-30384748
Coord A exon
chr5:30384478-30384588
Coord C2 exon
chr5:30384066-30384186
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCACCCTCCCCTCCCCTAGAGG
3' ss Score
9.29
5' ss Seq
GAGGTCCTG
5' ss Score
-2.13
Exon sequences
Seq C1 exon
CTGCTGTGGCTGGGACAGGCCCTCCG
Seq A exon
AGGGCCCTGTGGAGCGAGCATGTAGCCCCTGACGGGCGCATCTACTACTACAACGCTGACGACAAGCAGTCCGTGTGGGAGAAGCCCAGCGTGCTCAAGTCCAAGGCAGAG
Seq C2 exon
CTCCTGCTGTCCCAGTGTCCCTGGAAAGAGTACAAGTCGGACACAGGCAAACCTTACTACTACAACAATCAGAGTAAGGAGTCCCGCTGGACCCGGCCCAAGGACCTGGATGACCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016589-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.378 C2=0.683
Domain overlap (PFAM):
C1:
PF0039721=WW=PU(3.2=11.1)
A:
PF0039721=WW=PD(90.3=75.7)
C2:
PF0039721=WW=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]