RnoEX0070115 @ rn6
Exon Skipping
Gene
ENSRNOG00000052539 | Prpf40b
Description
pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]
Coordinates
chr7:140969413-140970097:+
Coord C1 exon
chr7:140969413-140969438
Coord A exon
chr7:140969562-140969672
Coord C2 exon
chr7:140969977-140970097
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCCCCTTCCCCAGAGG
3' ss Score
9.88
5' ss Seq
GAGGTCCTG
5' ss Score
-2.13
Exon sequences
Seq C1 exon
CTGCTGTGCCTGGCACAGGCCCTCCG
Seq A exon
AGGGCCTTATGGAGTGAACACGTGGCCCCTGACGGGCGCATCTACTACTACAATGCAGATGATAAGCAATCCGTGTGGGAGAAGCCCAGCGCACTCAAGTCTAAAGCCGAG
Seq C2 exon
CTGCTACTGTCCCAGTGTCCCTGGAAAGAGTATAAATCAGACACAGGAAAGCCTTACTACTACAACAACCAGAGTCAGGAGTCCCGTTGGACCCGACCCAAGGACCTGGATGACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052539-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.432 C2=0.659
Domain overlap (PFAM):
C1:
PF0039721=WW=PU(3.2=11.1)
A:
PF0039721=WW=PD(90.3=75.7)
C2:
PF0039721=WW=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]