MmuEX6056579 @ mm10
Exon Skipping
Gene
ENSMUSG00000023033 | Scn8a
Description
sodium channel, voltage-gated, type VIII, alpha [Source:MGI Symbol;Acc:MGI:103169]
Coordinates
chr15:101017041-101024383:+
Coord C1 exon
chr15:101017041-101017195
Coord A exon
chr15:101018351-101018524
Coord C2 exon
chr15:101024261-101024383
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGCCGCTATGTCTCTTTCAGGCC
3' ss Score
9.34
5' ss Seq
GCTGTAGGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
GTTGTGTCCAGAGGTTCAAGTGCTGCCAGGTCAACATCGAGGAAGGACTAGGCAAGTCGTGGTGGATCCTGCGGAAAACCTGCTTCCTCATTGTGGAGCACAATTGGTTTGAGACCTTCATCATTTTCATGATTCTCCTCAGCAGTGGAGCCCTG
Seq A exon
GCCTTCGAGGACATCTACATTGAGCAGAGGAAGACCATCCGTACCATCCTGGAGTATGCGGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGTTGCTCAAATGGACAGCCTATGGCTTCGTCAAGTTCTTCACCAATGCCTGGTGCTGGTTGGACTTCCTCATTGTGGCT
Seq C2 exon
GTCTCTTTAGTCAGCCTTATAGCTAATGCCCTGGGCTACTCGGAACTAGGTGCCATAAAGTCCCTTAGGACCCTAAGAGCTTTGAGACCCTTAAGAGCCTTATCACGATTTGAAGGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023033-'47-55,'47-48,52-55=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(20.2=84.6)
A:
PF0052026=Ion_trans=PU(17.0=67.2)
C2:
PF0052026=Ion_trans=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCAGAGGTTCAAGTGC
R:
AGGGTCTCAAAGCTCTTAGGGT
Band lengths:
244-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types